BlockCounter.

Run BlockCounter

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Instructions

Example Files

References

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Example Files.

These examples were produced using information from the SCL locus.
Input files.
scl_hum_mus_lagan.mfa Two-way alignment of human and mouse sequences in FASTA format
scl_hum_dog_mus_lagan.mfa Three-way alignment of human, dog and mouse sequences in FASTA format
scl_hum_dog_mus_rat_lagan.mfa Four-way alignment of human, dog, mouse and rat sequences in FASTA format
hsscl.gff Human GFF file (Reference sequence)
cfscl.gff Dog GFF file
mmscl.gff Mouse GFF file
rnscl.gff Rat GFF file

Output files.
Postscript PDF Text Block distribution for the 4-way alignment
Postscript PDF Text Plot of block size positions in relation to the reference sequence (human).

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