TFBSsearch.

Run TFBSsearch

Background

Instructions

Example Files

References

Links

Homepage

Example files.

These examples were produced using information from the SCL locus.
Input files.
scl_hum_dog_mus_rat.mfa The four sequences aligned in Fasta format
hsscl.seq Human Fasta Sequence
cfscl.seq Dog Fasta Sequence
mmscl.seq Mouse Fasta Sequence
rnscl.seq Rat Fasta Sequence
hsscl.gff Human GFF file
cfscl.gff Dog GFF file
mmscl.gff Mouse GFF file
rnscl.gff Rat GFF file

Output files.
iupac.dat IUPAC code file used by TFBSsearch
scl_TFBSsearch.gff Output file produced by TFBSsearch (in GFF format)

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