TFBScluster - Mouse Genome-wide.

Run TFBScluster

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Run TFBScluster.

This version of TFBScluster is based on the UCSC alignments of:

  • Mouse (NCBI34/mm6) [Reference genome]
  • Human (NCBI35/hg17)

1. Select the number of different TFBS to analyse (MAX 5):

2. You can choose one of two TFBS datasets to construct clusters. These are:

In-house sites are consensus binding sites represented IUPAC codes taken from the literature, experimental work or other databases.

Xie et. al. (2005) Nature 434:338-345 these sites are over-represented consensus sequences that are conserved (human, dog, mouse and rat) in the promoters of RefSeq genes.

Ettwiller et. al. (2005) Genome Biology 6:R104 these sites are over-represented consensus sequences that conserved (human and mouse) in the promoters of Ensembl genes.

Select TFBS dataset:

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Last modified: Friday 4 August 2006.